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SRX20018340: GSM7187449: 50_1_BAT; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 27.4M spots, 5.5G bases, 1.8Gb downloads

External Id: GSM7187449_r1
Submitted by: UCLA
Study: Conserved multitissue transcriptomic adaptations to exercise training in humans and mice
show Abstracthide Abstract
Physical activity is associated with beneficial adaptations in human and rodent metabolism. We studied over 50 complex traits before and after exercise intervention in middle-aged men and a panel of 100 diverse strains of female mice. Candidate gene analyses in three brain regions, muscle, liver, heart, and adipose tissue of mice revealed genetic drivers of clinically relevant traits including volitional exercise volume, muscle metabolism, adiposity, and hepatic lipids. Although ~33% of genes differentially expressed in skeletal muscle following the exercise intervention were similar in mice and men independent of BMI, responsiveness of adipose tissue to exercise-stimulated weight loss appears impacted by species and underlying genotype. We leveraged genetic diversity to generate prediction models of metabolic trait responsiveness to volitional activity offering a framework for advancing personalized exercise prescription. Finally, we make the human and mouse data publicly available via user-friendly web-based application to enhance data mining and hypothesis development. Overall design: Expression profiling by RNA-Seq for five tissues (gonadal white adipose, heart, liver, quadriceps, brown adipose) in 50 inbred mouse strains under sedentary and exercised conditions
Sample: 50_1_BAT
SAMN34256162 • SRS17359993 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM7187449
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Whole quadriceps, gonadal white adipose tissue, heart, brown adipose tissue, and a portion of the liver were pulverized at the temperature of liquid nitrogen. Tissue was homogenized in Trizol (Invitrogen, Carlsbad, CA, USA), RNA was isolated using the RNeasy Isolation Kit (Qiagen, Hilden, Germany), and RNA concentration and quality were assessed (RIN > 7.0 used in downstream applications) Libraries were prepared using KAPA mRNA HyperPrep Kits and KAPA Dual Index Adapters (Roche, Basel, Switzerland) per manufacturer's instructions. A total of 800-1000 ng of RNA was used for library preparation with settings 200-300 bp and 12 PCR cycles. The resultant libraries were tested for quality.
Runs: 1 run, 27.4M spots, 5.5G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR2422179827,378,0735.5G1.8Gb2023-04-20

ID:
27416050

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